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(Expt:00189) The genetic requirements for fast and slow growth in Mycobacteria
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Experiment name *
The genetic requirements for fast and slow growth in Mycobacteria
ArrayExpress Accession
E-BUGS-83
Description *
Mycobacterium tuberculosis infects a third of the world's population. Primary tuberculosis involving active fast bacterial replication is often followed by asymptomatic latent tuberculosis, which is characterised by slow or non-replicating bacteria. Reactivation of the latent infection involving a switch back to active bacterial replication can lead to post-primary transmissible tuberculosis. Mycobacterial mechanisms involved in slow growth or switching growth rate provide rational targets for the development of new drugs against persistent mycobacterial infection. Using chemostat culture to control growth rate we screened a transposon mutant library by Transposon site hybridization (TraSH) selection to define the genetic requirements for slow and fast growth of Mycobacterium bovis (BCG) and for the requirements of switching growth rate. We identified 84 genes that are exclusively required for slow growth (69 hours doubling time) and 256 genes required for switching from slow to fast growth. To validate these findings we performed experiments using individual M. tuberculosis and M. bovis BCG knock out mutants. We have demonstrated that growth rate control is a carefully orchestrated process which requires a distinct set of genes encoding several virulence determinants, gene regulators and metabolic enzymes. The mce1 locus appears to be a component of the switch to slow growth rate, which is consistent with the proposed role in virulence of M. tuberculosis. These results suggest novel perspectives for unravelling the mechanisms involved in the switch between acute and persistent TB infections and provide a means to study aspects of this important phenomenon in vitro.
Publication
Beste DJV, Espasa M, Bonde B, Kierzek AM, Stewart GR and McFadden JJ (2009) The genetic requirements for fast and slow growth in Mycobacteria. PLoS One
PubMed ID (PMID):
accepted
Summary
Mycobacterium bovis BCG sample trees
Experimental protocols
TBv1_0_0 array design
TBv1_1_0 array design
Raw data
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download
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Analysed data
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Data tree
Experimental Designs
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Experiment Design Type *
genetic modification design
growth condition design
replicate design
Replicate description
-- 3 biological replicates, 2 technical replicates
Quality control description
-- Intensity range 20.4% < 1000, 1000 < 65.9% < 10000, 13.7% > 10000
Normalisation description
-- none
© 2002-2006 BµG@S group, Department of Cellular and Molecular Medicine, St George's, University of London